ampvis2 is an R-package to conveniently visualise and analyse 16S rRNA amplicon data in different ways.
Tip: For faster installation you can utilise multicore processors by setting the
Ncpus argument, fx
remotes::install_github("madsalbertsen/ampvis2", Ncpus = 6). Most CPU’s today can run 8 processes simultaneously, so setting it to 6 is a good starting point unless you know you have a CPU with more (logical) cores than 8.
Check out the blog posts at http://albertsenlab.org/ about selected ampvis2 plotting functions. The posts include details as well as example code:
An interactive Shiny app with some of the basic functionality of ampvis2 can be found at: https://kasperskytte.shinyapps.io/shinyampvis
To install a specific (older) release of ampvis2 use
"@release" as suffix, fx
remotes::install_github("firstname.lastname@example.org") to install the first release (2.0) of ampvis2. The latest stable release can be installed with