Data and filtering Functions for loading, exporting and subsetting the data.
amp_load	Load data for ampvis functions
amp_subset_samples	Subset ampvis2 objects based on sample metadata
amp_subset_taxa	Subset ampvis2 objects based on taxonomy
amp_import_biom	Import OTU table from BIOM file
amp_import_usearch	Import OTU table from USEARCH pipelines
amp_export_fasta	Export raw DNA sequences
amp_export_otutable	Export OTU-table
Plotting functions Functions for visualising amplicon data.
amp_rarecurve	Rarefaction curve
amp_boxplot	Boxplot
amp_heatmap	Heatmap
amp_ordinate	Ordination plot
amp_core	Core community analysis
amp_timeseries	Abundance timeseries
amp_otu_network	Network plot
amp_frequency	Frequency plot
amp_rankabundance	Rank abundance plot
amp_alphadiv	Alpha-diversity analysis
amp_venn	Venn diagram of core OTUs